The prestigious National Science Foundation, or NSF, Fellowship has been awarded to our lab’s talented Ph.D. student, Breanna Lee. She achieved this with her proposed project to examine using sparse data/ML techniques to better predict rare pediatric diseases where clinical trials and data are lacking. This lab is very excited for Breanna as this is her third fellowship awarded, making her one of the most decorated Ph.D. students in BME. This is Breanna’s first year at GT-Emory, but she is already making waves. Our lab is anxious to see the amazing things she does next.
PURA Awarded to One of Our Own, Albert Lee
Albert Lee, one of the many talented students in our lab, has been awarded the President’s Undergraduate Research Award (PURA) salary fellowship for Summer 2019. This is a prestigious honor that has been hard earned through Albert’s work using an optimized form of dynamic meta-analysis to better inform preclinical ALS and neurological disease etiological assessment and potential therapy identification. The Pathology Dynamics lab has been lucky to have Albert be a part of our team for a couple of years now, building a resume that includes conferences and journal co-authorships.
Emory ADRC Pilot Grant Awarded on Alzheimer’s Disease
The Laboratory for Pathology Dynamics is grateful to be awarded a 1-year pilot grant from the Emory Alzheimer’s Disease Research Consortium (ADRC) entitled, “Towards network models to differentiate Alzheimer’s from normative aging.” Dr. Mitchell is the PI of this research project, which focuses on the complex data aggregation and integration necessary for future predictive algorithms capable of differentiating cognitive decline due to normative aging from cognitive decline due to pathological Alzheimer’s Disease. As part of this pilot, the lab will be aggregating multiple complex clinical data sets, performing proof-of-concept machine learning prediction on aggregated clinical data, and using novel literature mining software to help prioritize predictive or distinguishing metrics from the published Alzheimer’s and aging literature. The lab will collaborate with clinicians at the Emory ADRC to help prioritize clinical insight and optimize clinical data platforms.
NIH-NCI Grant Awarded on BCR ABL Leukemias
The Laboratory for Pathology Dynamics was recently awarded a 2-year National Institute of Health and National Cancer Institute (NIH-NCI) R21 grant entitled, “A Big Data Approach to BCR ABL Leukemias”. Dr. Mitchell is the PI of this research project, which will utilize a plethora of existing and novel big data analytics techniques, from computational modeling to text mining to machine learning, to improve personalized medicine for BCR ABL leukemias. While the advent of tyrosine kinase inhibitors (TKIs) has vastly improved life span for BCR ABL cancer patients, such chemotherapy is currently recommended to be taken for life, as even patients who reach remission have >60% chance of relapse if they stop treatment. With such long-term treatment, therapy resistance is an issue. There are a variety of TKIs, all of which have their own unique acute or chronic side effect profiles, which also influence safety and compliance. The goal of this work is to uncover complex patterns that improve understanding of the etiology and treatment of BCR ABL cancers and lead to predictive medicine algorithms that can personalize treatment and improve TKI selection, long-term outcomes, and overall quality of life. The lab will collaborate with oncologists specializing in pediatric and adult hematological malignancies.
New Lab Publication: Astrocyte-Mediated Neuromodulatory Regulation in Preclinical ALS: A Metadata Analysis
Over the Christmas break, we had a peer-reviewed journal article published in Frontiers in Cellular Neuroscience, which examined neuromodulatory regulation in the SOD1 G93A ALS mouse model. This paper showcases the importance of curated data and how it is used to do analyses.
This paper has an amazing string of successful co-authors who were all undergrad alums in the lab. Kathleen Jordan is now working as a clinical research technologist for the REAR lab at Georgia Tech, Joseph Murphy is moving into industry, and Anjanya Singh is currently in medical school in Texas and doing quite well.
ANA and BMES Conference Presentations
From October 17th to the 23rd, members of the Laboratory for Pathology Dynamics presented their research at the BMES and ANA annual conferences. Presenters included graduate, undergraduate, and high school level lab members giving both poster and oral presentations. Congratulations to all of our presenters!
ALZ Walk to End Alzheimer’s Disease
Our Lab in the News: Alzheimer’s Association Award
Our lab was honored to receive a grant from the Alzheimer’s Association for the diligent work in trying to uncover the mechanisms of Alzheimer’s disease. We are very proud to receive this grant and aim to continue making progress on this front. Check out the BME department press release for more information!
https://www.bme.gatech.edu/bme/mitchell-gets-alzheimers-association-award
New Lab Publication: Associative Increases in ALS Survival Duration With Bi-PAP Usage
Congratulations to Nishad Khamankar, the first author of the highly anticipated bi-level positive airway pressure (Bi-PAP) for ALS. This paper was published in Frontiers in Neurology and examines the benefits of daily Bi-PAP and cough assist on the survival of ALS patients. This paper has helped move ALS care forward and our lab is very proud of Nishad for his work.
Download your copy here: https://www.frontiersin.org/articles/10.3389/fneur.2018.00578/full
BMES Abstracts Fall 2018
Congratulations to all of our lab members who had abstracts accepted for poster presentations at the Fall 2018 BMES Conference.
Special congratulations to the Bi-PAP team for being selected for to give an oral presentation!
Poster Presentations
- Biocuration: Improving Automation, Productivity, Accuracy and Quality Control
- Authors: Joseph Murphy, Kathleen Jordan, Andrew Sedler, Keelie Denson, Cassie Mitchell
- Systematic Analysis of the Topic Landscape of Aging and Alzheimer’s Disease Literature
- Authors: Andrew Sedler, Cassie Mitchell
- Dynamic Meta-Analysis Approach to In Silico Models of Temporal Multi-scalar Neurophysiology
- Authors: Albert Lee, Stefano Travaglino, Cassie Mitchell
- Informatics-based Literature Mapping to Expedite Research for Chronic Myeloid Leukemia
- Authors: Nidhi Mehra, Andrew Sedler, Cassie Mitchell
- Optimizing PEG “Feeding Tube” Intervention for ALS using Predictive Medicine
- Authors: Leila Bond, Paulamy Ganguly, Nishad Khamankar, Nolan Mallet, Cassie Mitchell
Oral Presentation
- Optimizing Bi-PAP Intervention for ALS using Predictive Medicine
- Authors: Nishad Khamankar, Leila Bond, Paulamy Ganguly, Nolan Mallet, Cassie Mitchell