Here you can find all the material you will need for the workshop!
All of the interactive notebooks contain the same information and algorithms, we recommend choosing a programming language for the duration of the whole workshop.
For detailed installation instructions, required packages, introductory programming tutorials, and language-specific materials for the laboratory on epidemic outbreaks, please select your preferred language below:
The two papers that will be discussed during the Journal club are:
- Gostic, Katelyn M, Lauren McGough, Edward B Baskerville, Sam Abbott, Keya Joshi, Christine Tedijanto, Rebecca Kahn, et al. 2020. “Practical Considerations for Measuring the Effective Reproductive Number, Rt.” PLOS Computational Biology 16 (12): e1008409. https://doi.org/10.1371/journal.pcbi.1008409.
- Lavine, Jennie S, Ottar N Bjornstad, and Rustom Antia. 2021. “Immunological Characteristics Govern the Transition of COVID-19 to Endemicity.” Science 371 (6530): 741 LP – 745. https://doi.org/10.1126/science.abe6522.