Brylinski, M, Lee S Y, Zhou H, Skolnick J. 2011. The utility of geometrical and chemical restraint information extracted from predicted ligand-binding sites in protein structure refinement. Journal of Structural Biology. 173(3):558-569. PDF
Zhou, H, Skolnick J. 2011. GOAP: A Generalized Orientation-Dependent, All-Atom Statistical Potential for Protein Structure Prediction. Biophysical Journal. 101(8):2043-2052. PDF
Kufareva, I, Rueda M, Katritch V, Stevens R C., Abagyan R, Skolnick J, Zhou H, Roy A. 2011. Status of GPCR Modeling and Docking as Reflected by Community-wide GPCR Dock 2010 Assessment. Structure. 19(8):1108-1126. PDF
Pandit, S B, Zhou H, Skolnick J. 2010. TASSER-based protein structure prediction. Introduction to Protein Structure Prediction: Methods and Algorithms. 14:219-242. PDF
Pandit, S B, Brylinski M, Zhou H, Gao M, Arakaki AK, Skolnick J. 2010. PSiFR: an integrated resource for prediction of protein structure and function. Bioinformatics (Oxford, England). 26(5):687-8. PDF
Zhou, H, Skolnick J. 2010. Improving threading algorithms for remote homology modeling by combining fragment and template comparisons. Proteins. 78(9):2041-8. PDF
Zhou, H, Pandit S B, Skolnick J. 2009. Performance of the Pro-sp3-TASSER server in CASP8. Proteins. 77 Suppl 9:123-7. PDF
Zhou, H, Skolnick J. 2009. Protein structure prediction by pro-Sp3-TASSER. Biophysical journal. 96(6):2119-27. PDF
Zhou, H, Skolnick J. 2008. Protein model quality assessment prediction by combining fragment comparisons and a consensus C(alpha) contact potential. Proteins. 71(3):1211-8. PDF
Zhou, H, Skolnick J. 2007. Ab initio protein structure prediction using chunk-TASSER. Biophysical journal. 93(5):1510-8. PDF
Zhou, H, Pandit S B, Lee SY, Borreguero J, Chen H, Wroblewska L, Skolnick J. 2007. Analysis of TASSER-based CASP7 protein structure prediction results. Proteins. 69 Suppl 8:90-7. PDF
Zhou, H, Xue B, Zhou Y. 2007. DDOMAIN: Dividing structures into domains using a normalized domain-domain interaction profile. Protein science: a publication of the Protein Society. 16(5):947-55.
Zhou, Y, Zhou H, Zhang C, Liu S. 2006. What is a desirable statistical energy function for proteins and how can it be obtained? Cell biochemistry and biophysics. 46(2):165-74.
Zhou, H, Zhou Y. 2005. Fold recognition by combining sequence profiles derived from evolution and from depth-dependent structural alignment of fragments.. Proteins. 58(2):321-8.
Zhou, H, Zhou Y. 2005. SPEM: improving multiple sequence alignment with sequence profiles and predicted secondary structures.. Bioinformatics (Oxford, England). 21(18):3615-21.
Zhou, H, Zhou Y. 2005. SPARKS 2 and SP3 servers in CASP6.. Proteins. 61 Suppl 7:152-6.
Zhou, H, Zhang C, Liu S, Zhou Y. 2005. Web-based toolkits for topology prediction of transmembrane helical proteins, fold recognition, structure and binding scoring, folding-kinetics analysis and comparative analysis of domain combinations.. Nucleic acids research. 33(Web Server issue):W193-7.
Zhou, Z, Feng H, Zhou H, Zhou Y, Bai Y. 2005. Design and folding of a multidomain protein.. Biochemistry. 44(36):12107-12.
Zhou, H, Zhou Y. 2004. Single-body residue-level knowledge-based energy score combined with sequence-profile and secondary structure information for fold recognition.. Proteins. 55(4):1005-13.
Zhang, C, Liu S, Zhou H, Zhou Y. 2004. An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.. Protein science : a publication of the Protein Society. 13(2):400-11.
Liu, S, Zhang C, Zhou H, Zhou Y. 2004. A physical reference state unifies the structure-derived potential of mean force for protein folding and binding.. Proteins. 56(1):93-101.
Zhou, H, Zhou Y. 2004. Quantifying the effect of burial of amino acid residues on protein stability.. Proteins. 54(2):315-22.
Zhang, C, Liu S, Zhou H, Zhou Y. 2004. The dependence of all-atom statistical potentials on structural training database.. Biophysical journal. 86(6):3349-58.
Bai, Y, Zhou H, Zhou Y. 2004. Critical nucleation size in the folding of small apparently two-state proteins.. Protein science: a publication of the Protein Society. 13(5):1173-81.
ZHOU, YQ, Zhou H, ZHANG C, et al. 2004. Toward a physical energy function for intra- and inter-protein interactions by combining structural knowledge with physical principles. BIOPHYSICAL JOURNAL. 86 (1):306A-307A.
Zhou, H, Zhou Y. 2003. Predicting the topology of transmembrane helical proteins using mean burial propensity and a hidden-Markov-model-based method.. Protein science : a publication of the Protein Society. 12(7):1547-55.
Zhou, Y, Zhou H, Karplus M. 2003. Cooperativity in Scapharca dimeric hemoglobin: simulation of binding intermediates and elucidation of the role of interfacial water. Journal of molecular biology. 326(2):593-606.
Zhou, H, Zhou Y. 2002. Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction.. Protein science : a publication of the Protein Society. 11(11):2714-26.
Zhou, H, Zhou Y. 2002. Folding rate prediction using total contact distance.. Biophysical journal. 82(1 Pt 1):458-63.
Zhou, H, Zhou Y. 2002. Stability scale and atomic solvation parameters extracted from 1023 mutation experiments.. Proteins. 49(4):483-92.
Linhananta, A, Zhou H, Zhou Y. 2002. The dual role of a loop with low loop contact distance in folding and domain swapping.. Protein science: a publication of the Protein Society. 11(7):1695-701. Abstract
Zhou, H, TAJKHORSHID E, FRAUENHEIM T, et al. 2002. Performance of the AM1, PM3, and SCC-DFTB methods in the study of conjugated Schiff base molecules. CHEMICAL PHYSICS. 277:91-103.
Zhou, H, ZHOU YQ. 2002. Distance-scaled, finite ideal-gas reference state improves structure- derived potentials of mean force for structure selection and stability prediction. PROTEIN SCIENCE. 12 (9):2121-21.
WANG, XL, KUANG YP, Zhou H, et al. 1999. Single top quark production in e gamma collisions and testing technicolor models. PHYSICAL REVIEW D. 60 (1) :4002.
Li, CS, OAKES RJ, YANG JM, Zhou H. 1998. Supersymmetric QCD corrections to single top quark production at the Fermilab tevatron. PHYSICAL REVIEW D. 57:2009-2012.
Zhou, H, KUANG YP, YUE CX, et al. 1998. Testing technicolor models in top quark pair production at high energy photon colliders. PHYSICAL REVIEW D. 57 ( 7):4205-18.
Zhou, H. 1998. CP violation in top quark pair production at hadron colliders. PHYSICAL REVIEW D. 58 (11):4002.
Li, CS, YUAN CP, Zhou H. 1998. Supersymmetric QCD parity nonconservation in top quark pairs at the Tevatron. PHYSICS LETTERS B. 424 (1-2):76-84.
Zhou, H. 1998. Determining top quark CP violating dipole couplings from e(+)e(-)- >(tt)over-bar. PHYSICS LETTERS B. 439 (3-4):393-397.
YUE, CX, Zhou H, KUANG YP, et al. 1997. t(t)over-bar production rates at the Fermilab Tevatron and the CERN LHC in top-color-assisted multiscale technicolor models. PHYSICAL REVIEW D. 55:5541-5548.
Zhou, H, Li CS. 1997. Supersymmetric QCD corrections to top quark pair production at CERN LHC. PHYSICAL REVIEW D. 55 (7):4421-29.
Zhou, H, Li CS, KUANG YP. 1997. Yukawa corrections to top quark production at the CERN LHC in two-Higgs-doublet models. PHYSICAL REVIEW D . 55 (7):4412-4420.
Li, CS, Zhou H, ZHU YL, et al. 1996. Strong supersymmetric quantum effects on top quark production at the Fermilab Tevatron. PHYSICS LETTERS B. 379 (1-4):135-140.
Li, CS, YANG JM, ZHU YL, Zhou H. 1996. Yukawa corrections to top quark pair production in photon-photon collisions. PHYSICAL REVIEW D. 54 (7):4662-4676.
WANG, H, Li CS, Zhou H, et al. 1996. Supersymmetric QCD corrections to top quark pair production in photon-photon collisions. PHYSICAL REVIEW D. 54 (7):4374-79.
Zhou, H, KUANG YP. 1996. Detecting the intermediate-mass Higgs boson through the associate production channel pp->t(t)over-bar-HX. PHYSICAL REVIEW D. 53 (7):4095-98.
Zhou, H, KUANG YP. 1993. DIFFICULTIES OF DETECTING THE INTERMEDIATE-MASS HIGGS-BOSON IN THE ASSOCIATED PRODUCTION CHANNEL PP- ]T(T)OVER-BAR-HX. PHYSICAL REVIEW D. 47 (9):R3680-R3684.
Zhou, H, KUANG YP. 1991. COUPLED-CHANNEL EFFECTS IN HADRONIC TRANSITIONS IN HEAVY-QUARKONIUM SYSTEMS . PHYSICAL REVIEW D. 44 (3):756-769.