see Google Scholar
Metabolite dependence of antibiotic susceptibility in a gut microbe.
Allison KR.
mSphere (2024).
Multicellular dynamics and wealth distribution in bacteria.
Allison KR.
Molecular Systems Biology 20: 845-847 (2024).
Escherichia coli self-organizes developmental rosettes.
Puri D and Allison KR.
PNAS 121: e2315850121 (2024).
Fluorescence-based protocol for revealing cellular arrangement in biofilms.
Puri D, Fang X, and Allison KR.
STAR Protocols 4: 102270 (2023). PDF
Resuscitation dynamics reveal persister partitioning after antibiotic treatment.
Fang X and Allison KR.
Molecular Systems Biology 19: e11320 (2023). PDF Supporting Info Supporting Movies
Evidence of a possible multicellular life cycle in Escherichia coli.
Puri D, Fang X, and Allison KR.
iScience 26: 105795 (2023). PDF Supporting Info
Potentiating aminoglycoside antibiotics to reduce their toxic side effects.
Rosenberg CR, Fang X, and Allison KR.
PLOS One 15: e0237948 (2020). PDF Supporting Info
Antibiotics induce redox-related physiological alterations as part of their lethality.
Dwyer DJ, Belenky PA, Yang JH, MacDonald IC, Martell JD, Takahashi N, Chan CTY, Lobritz MA, Braff D, Schwarz E, Ye JD, Pati M, Vercruysse M, Ralifo PS, Allison KR, Khalil AS, Ting AY, Walker GC, and Collins JJ.
PNAS 111: E2100-E2109 (2014). PDF Supporting Info
Salmonella typhimurium intercepts Escherichia coli signaling to enhance antibiotic tolerance.
Vega NM, Allison KR, Samuels AN, Klempner MS, and Collins JJ.
PNAS 110:14420-14425 (2013). PDF Supporting Info
Wisdom of crowds for robust gene network inference.
Marbach D, Costello JC, Kuffner R, Vega NM, Prill RJ, Camacho DM, Allison KR, The Dream5 Consortium, Kellis M, Collins JJ, and Stolovitzky G.
Nature Methods 9: 796-804 (2012). PDF
Signaling-mediated bacterial persister formation.
Vega NM, Allison KR, Khalil AS, and Collins JJ.
Nature Chemical Biology 8: 431-433 (2012). PDF Supporting Info
Heterogeneous bacterial persisters and engineering approaches to eliminate them.
Allison KR, Brynildsen MP, and Collins JJ.
Current Opinion in Microbiology 14: 593-598 (2011). PDF
Metabolite-enabled eradication of bacterial persisters by aminoglycosides.
Allison KR, Brynildsen MP, and Collins JJ.
Nature 473: 216-220 (2011). PDF Supporting Info
Bacteria as control engineers.
Allison KR and Collins JJ.
Molecular Cell 41: 4-5 (2011). PDF